BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034F04LP1|AL429927
(875 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 805 0.0
>3x_Contig1688
Length = 18058
Score = 805 bits (394), Expect = 0.0
Identities = 452/478 (94%), Gaps = 3/478 (0%)
Strand = Plus / Minus
Query: 398 catcaatacttacgaaggacgtccgacttattcgtctcgacttccttcgtagttcttctt 457
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8919 catcaatacttacgatggacgtccgacttattcgtctcgacttccttcgtagttcttctt 8860
Query: 458 cttcttcttcgatatcagtttcggactcttgcaattcgtggcgccwgcgcmctgtaacta 517
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 8859 cttcttcttcgatatcagtttcggactcttgcaattcgtggcgcctgcgccctgtaacta 8800
Query: 518 twcgttcatcctcatcctcaccagaamagacagtgctctrtcccatagaaagaccaggwa 577
| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 8799 ttcgttcatcctcatcctcaccagtgcggacagtgctctgtcccatagaaagaccaggta 8740
Query: 578 ccagmwgtaactgatccgatagtatcagaagaacataactacmcgaagactgtcatcttc 637
|||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 8739 ccagctgtaactgatccg-tagtatcagaagaac-taactacccgaagactgtcatcttc 8682
Query: 638 attcaccawtmcaarttgatttatttgtaagaacacttaatacagtctggacatwaacta 697
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8681 attcaccattccaagttgatttatttgtaagaacacttaatacagtctggacattaacta 8622
Query: 698 cccttattaatacgccgatgactctcttcaggtaaagagtaaaaaagtatcagaagtatg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8621 cccttattaatacgccgatgactctcttcaggtaaagagtaaaaaagtatcagaagtatg 8562
Query: 758 gatttaaacttaaaaaaaaaggcacwragtataccagtggtagtgagatatggccaaatt 817
||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8561 gatttttacttaaaaagaaaggcactgagtataccagtggtagtgagatatggccaaatt 8502
Query: 818 tatagtatgatagaattttctatacttcagaaacccgttgggatcattcgtcwaatga 875
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 8501 tatagtatgatagaattttctatacttcagaaacccgtt-ggatcattcgtctaatga 8445
Score = 533 bits (261), Expect = e-151
Identities = 333/366 (90%), Gaps = 6/366 (1%)
Strand = Plus / Minus
Query: 1 gtaatcarccgcttttttcgtctctaagggtgtctctgacatatccttamcagamttgtg 60
||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 9302 gtaatcagccgcttttttcgtctctaagggtgtctctgacatatccttaccagacttgtg 9243
Query: 61 gccttmartctcgtcttcatcatctatctcaataacctgctagtgctattaatctgttcc 120
||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 9242 gccttcagtctcgtcttcatcatctatctcaataacctgct-gtgct-ttaatctgttcc 9185
Query: 121 tcttccgwaagtactttgatrtcatmgtcatmrccttctccaamggcctcgtgcagtwct 180
||||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||| ||
Sbjct: 9184 tcttccgtgagtactttgatgtcatcgtcatcgccttctccaacggcctcgtgcagttct 9125
Query: 181 tcttcttcttcwtmttcttcttggatcttrtgcttctgcwgattggtcttgcacattttg 240
||||||||||| | |||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 9124 tcttcttcttcttcttcttcttgg-tcttgtgcttctgctgattggtcttgcacattttg 9066
Query: 241 gawacgccactccataatctgcagtagaaatgattrcaggctcttcawtatcagaaacct 300
| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 9065 g-tacgccactccataatctgcagtagaaatgattgcaggctcttcattatcagatacct 9007
Query: 301 cttggggcggtgmggtggcgarattamwctgctctgtagtgtcgcctatattacagtgac 360
|||||||||||| |||||||| ||| |||||||||||||||||| |||| |||||||
Sbjct: 9006 cttggggcggtgcggtggcgagattgctctgctctgtagtgtcgcc--tatttcagtgac 8949
Query: 361 atgttg 366
||||||
Sbjct: 8948 atgttg 8943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.717 1.34
Gapped
Lambda K H
1.42 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7228
Number of Sequences: 1807
Number of extensions: 7228
Number of successful extensions: 793
Number of sequences better than 1.0e-20: 1
length of query: 875
length of database: 10,358,551
effective HSP length: 16
effective length of query: 859
effective length of database: 10,329,639
effective search space: 8873159901
effective search space used: 8873159901
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.6 bits)
S1: 12 (25.0 bits)
S2: 49 (100.6 bits)